PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_0C0899C15.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 553aa    MW: 57771.3 Da    PI: 4.7904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_0C0899C15.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30316375159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dg++WrKYGqK+ kg+++pr+YYrCt a  Cpv+k+v+r++ed +++++tYeg+Hnh+
  Traes_6AL_0C0899C15.1 316 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCQEDMSILITTYEGTHNHP 375
                            58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-32301377IPR003657WRKY domain
SuperFamilySSF1182906.28E-27309377IPR003657WRKY domain
PROSITE profilePS5081128.162311377IPR003657WRKY domain
SMARTSM007744.7E-37316376IPR003657WRKY domain
PfamPF031068.6E-27317375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MSSSKRKRAD IDLERRDDDV DDGSGDHHPG EAAPRVQKEG QIKEGEAPAK EVVEVVVDRG  60
GDGSKEEIKY GTQQGGVIEE DKQSAAAAAD NDAGDGIDDE EGDGGGTGAE DKHMVEAAPG  120
DGYGDGDHEH TAMAQDELST MQEEMEKMKE ENKMLRRVVD RTVRDYYELQ TKLAAYQKQP  180
ADQEPKETEV FLSLGGTAPA AAVAEAKSKE EQAALRPSVG SDDTDDGREG LGLSLSLRTS  240
SYEDEARRDV VDGGAPDIVT DVGKVRGYAL LESSRMSPPA SGDLAAGGGI GSQQGVNAAN  300
RKTRVSVRVR CQGPTMNDGC QWRKYGQKVA KGNPCPRAYY RCTVAPACPV RKQVQRCQED  360
MSILITTYEG THNHPLPVGA TAMASTATAG AGAATFMLLS STTSDAAVSG GPPPASSSYL  420
SPYLQPNSSS QYHSSASPLM SGNMGGGGAQ HLSMFGHSSG LSAQPATHLK YPWPPNPSHG  480
GAAGLGGGKR PFWGTGGVDD VRPTALPDNA GTMASDPNQF SAAIATAISN VIGKDGQATR  540
SKEGESSNKW GGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21303379176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632470.0AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701133.11e-170PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 61
TrEMBLW5G5750.0W5G575_WHEAT; Uncharacterized protein
STRINGMLOC_71463.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-49WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]